Index

A

add_group_box() (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow method)

add_opacity_slider() (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow method)

C

calculate_errors() (in module mphy0026.algorithms.camera_calibration) check_position() (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow method) check_scale() (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow method) check_tracker_data() (in module mphy0026.algorithms.compute_tracked_pointer_posn)

ChessboardOverlay (class in mphy0026.ui.mphy0026_chessboard_overlay_app) circle_selected() (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow method) compute_tracked_pointer_posn() (in module mphy0026.algorithms.compute_tracked_pointer_posn) create_manual_reg_parser() (in module mphy0026.ui.mphy0026_manual_registration_command_line) create_tracker() (in module mphy0026.factory.tracker_factory)

D

distort() (in module mphy0026.algorithms.camera_calibration)

draw_circle() (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow method)

E

extract_pointer_offset() (in module mphy0026.algorithms.compute_tracked_pointer_posn)

I

InteractiveMeasure (class in mphy0026.algorithms.camera_calibration)

L

liver_selected() (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow method) load_file_of_points() (in module mphy0026.ui.mphy0026_register_app) load_intrinsic() (in module mphy0026.algorithms.camera_calibration)

load_matrix() (in module mphy0026.algorithms.camera_calibration) load_matrix_as_point() (in module mphy0026.algorithms.camera_calibration) load_model_points() (in module mphy0026.algorithms.camera_calibration) load_points_and_register() (in module mphy0026.ui.mphy0026_register_app)

M

main() (in module mphy0026.ui.mphy0026_chessboard_overlay_command_line) (in module mphy0026.ui.mphy0026_grab_pointer_command_line) (in module mphy0026.ui.mphy0026_manual_registration_command_line) (in module mphy0026.ui.mphy0026_overlay_command_line) (in module mphy0026.ui.mphy0026_pivot_calib_command_line) (in module mphy0026.ui.mphy0026_quadview_command_line) (in module mphy0026.ui.mphy0026_register_command_line) (in module mphy0026.ui.mphy0026_slice_overlay_command_line) (in module mphy0026.ui.mphy0026_template_calibration_command_line) MainWindow (class in mphy0026.ui.mphy0026_slice_overlay_app) ManualRegistrationMainWidget (class in mphy0026.ui.mphy0026_manual_registration_demo) ManualRegistrationMainWindow (class in mphy0026.ui.mphy0026_manual_registration_demo) module mphy0026 mphy0026.algorithms mphy0026.algorithms.camera_calibration mphy0026.algorithms.compute_tracked_pointer_posn mphy0026.algorithms.registration mphy0026.factory mphy0026.factory.tracker_factory mphy0026.io mphy0026.ui mphy0026.ui.mphy0026_chessboard_overlay_app mphy0026.ui.mphy0026_chessboard_overlay_command_line mphy0026.ui.mphy0026_grab_pointer_app mphy0026.ui.mphy0026_grab_pointer_command_line mphy0026.ui.mphy0026_manual_registration_command_line mphy0026.ui.mphy0026_manual_registration_demo mphy0026.ui.mphy0026_overlay_app mphy0026.ui.mphy0026_overlay_command_line mphy0026.ui.mphy0026_pivot_calib_app mphy0026.ui.mphy0026_pivot_calib_command_line mphy0026.ui.mphy0026_quadview_app mphy0026.ui.mphy0026_quadview_command_line mphy0026.ui.mphy0026_register_app mphy0026.ui.mphy0026_register_command_line mphy0026.ui.mphy0026_slice_overlay_app mphy0026.ui.mphy0026_slice_overlay_command_line mphy0026.ui.mphy0026_template_calibration_app mphy0026.ui.mphy0026_template_calibration_command_line mphy0026_chessboard_overlay mphy0026_grab_pointer mphy0026_manual_registration mphy0026_overlay mphy0026_pivot_calib mphy0026_quadview mphy0026_registration mphy0026_slice_overlay mphy0026_template_calibration mphy0026 module mphy0026.algorithms module mphy0026.algorithms.camera_calibration module mphy0026.algorithms.compute_tracked_pointer_posn module mphy0026.algorithms.registration module mphy0026.factory module

mphy0026.factory.tracker_factory module mphy0026.io module mphy0026.ui module mphy0026.ui.mphy0026_chessboard_overlay_app module mphy0026.ui.mphy0026_chessboard_overlay_command_line module mphy0026.ui.mphy0026_grab_pointer_app module mphy0026.ui.mphy0026_grab_pointer_command_line module mphy0026.ui.mphy0026_manual_registration_command_line module mphy0026.ui.mphy0026_manual_registration_demo module mphy0026.ui.mphy0026_overlay_app module mphy0026.ui.mphy0026_overlay_command_line module mphy0026.ui.mphy0026_pivot_calib_app module mphy0026.ui.mphy0026_pivot_calib_command_line module mphy0026.ui.mphy0026_quadview_app module mphy0026.ui.mphy0026_quadview_command_line module mphy0026.ui.mphy0026_register_app module mphy0026.ui.mphy0026_register_command_line module mphy0026.ui.mphy0026_slice_overlay_app module mphy0026.ui.mphy0026_slice_overlay_command_line module mphy0026.ui.mphy0026_template_calibration_app module mphy0026.ui.mphy0026_template_calibration_command_line module mphy0026_chessboard_overlay module mphy0026_grab_pointer module mphy0026_manual_registration module mphy0026_overlay module mphy0026_pivot_calib module mphy0026_quadview module mphy0026_registration module mphy0026_slice_overlay module mphy0026_template_calibration module multiply_points_by_matrix() (in module mphy0026.algorithms.camera_calibration)

O

OverlayMainWindow (class in mphy0026.ui.mphy0026_slice_overlay_app)

OverlaywMainWindow (class in mphy0026.ui.mphy0026_overlay_app)

P

picked_object_directory_reader() (in module mphy0026.algorithms.camera_calibration) picked_object_reader() (in module mphy0026.algorithms.camera_calibration) plot_errors() (in module mphy0026.algorithms.camera_calibration)

plot_errors_interactive() (in module mphy0026.algorithms.camera_calibration) PointerDrivenQuadViewer (class in mphy0026.ui.mphy0026_quadview_app) project() (in module mphy0026.algorithms.camera_calibration)

Q

QuadViewMainWidget (class in mphy0026.ui.mphy0026_quadview_app)

QuadViewMainWindow (class in mphy0026.ui.mphy0026_quadview_app)

R

register_point_sets() (in module mphy0026.algorithms.registration) register_points() (in module mphy0026.ui.mphy0026_register_app) reset_models() (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow method) reset_text_labels() (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow method) run_app() (in module mphy0026.ui.mphy0026_manual_registration_demo) run_chessboard_overlay() (in module mphy0026.ui.mphy0026_chessboard_overlay_app)

run_grab_pointer() (in module mphy0026.ui.mphy0026_grab_pointer_app) run_overlay() (in module mphy0026.ui.mphy0026_overlay_app) (in module mphy0026.ui.mphy0026_slice_overlay_app) run_pivot_calibration() (in module mphy0026.ui.mphy0026_pivot_calib_app) run_quadview() (in module mphy0026.ui.mphy0026_quadview_app) run_template_calibration() (in module mphy0026.ui.mphy0026_template_calibration_app)

S

set_opacity() (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow method) set_target_liver() (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow method) setup_circle_overlay() (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow method) setup_controls() (mphy0026.ui.mphy0026_slice_overlay_app.MainWindow method) setup_liver_overlay() (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow method) setup_overlay() (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow method) setup_target() (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow method) show_controls_dialog() (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow method) start() (mphy0026.ui.mphy0026_chessboard_overlay_app.ChessboardOverlay method) (mphy0026.ui.mphy0026_slice_overlay_app.MainWindow method)

staticMetaObject (mphy0026.ui.mphy0026_manual_registration_demo.ManualRegistrationMainWidget attribute) (mphy0026.ui.mphy0026_manual_registration_demo.ManualRegistrationMainWindow attribute) (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow attribute) (mphy0026.ui.mphy0026_quadview_app.PointerDrivenQuadViewer attribute) (mphy0026.ui.mphy0026_quadview_app.QuadViewMainWidget attribute) (mphy0026.ui.mphy0026_quadview_app.QuadViewMainWindow attribute) (mphy0026.ui.mphy0026_slice_overlay_app.MainWindow attribute) (mphy0026.ui.mphy0026_slice_overlay_app.OverlayMainWindow attribute)

T

toggle_model() (mphy0026.ui.mphy0026_slice_overlay_app.MainWindow method)

toggle_slice() (mphy0026.ui.mphy0026_slice_overlay_app.MainWindow method)

U

update() (mphy0026.ui.mphy0026_chessboard_overlay_app.ChessboardOverlay method) (mphy0026.ui.mphy0026_overlay_app.OverlaywMainWindow method)

update_position() (mphy0026.ui.mphy0026_quadview_app.PointerDrivenQuadViewer method) update_reslice() (mphy0026.ui.mphy0026_slice_overlay_app.OverlayMainWindow method)

X

x_changed() (mphy0026.ui.mphy0026_slice_overlay_app.MainWindow method)

Y

y_changed() (mphy0026.ui.mphy0026_slice_overlay_app.MainWindow method)